Image Data Type: NIFTI (.nii)
Image Preprocessing: FSL (FMRIB Software Library)
[Step 1]: Brain extraction
Tool: BET
Setting: Same as default (f – 0.5 g – 0)
[Step 2]: Registration
Tool: FLIRT
Standard Brain: /fsl/data/standard/ MNI152_T1_1mm_brain.nii.gz
Setting: Same as default (-bins 256 -cost corratio -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -dof 12 -interp trilinear)
[Step 3]: Tissue segmentation
Tool: FAST
Setting: Same as default (-t 1 -n 3 -H 0.1 -I 4 -l 20.0)
CP is another category that represents the functional status at the time the patients received the cognitive evaluation
CP Data Type: Text file (.txt)